Genome-Wide Population Genetic Analysis of Commercial, Indigenous, Game, and Wild Chickens Using 600K SNP Microarray Data

Genome-Wide Population Genetic Analysis of Commercial, Indigenous, Game, and Wild Chickens Using 600K SNP Microarray Data

Following hen domestication, diversified hen breeds have been developed by each pure and synthetic choice, which led to the buildup of ample genetic and phenotypic variations, making chickens a great genetic analysis mannequin. To higher perceive the genetic construction of hen breeds beneath completely different choice pressures, we genotyped varied hen populations with particular choice … Read more

An empirical examination of sample size effects on population demographic estimates in birds using single nucleotide polymorphism (SNP) data

An empirical examination of sample size effects on population demographic estimates in birds using single nucleotide polymorphism (SNP) data

Pattern dimension is a essential facet of research design in inhabitants genomics analysis, but few empirical research have examined the impacts of small pattern sizes. We used datasets from eight diverging hen lineages to make pairwise comparisons at totally different ranges of taxonomic divergence (populations, subspecies, and species). Our knowledge are from loci linked to … Read more

Population Structure Assessed Using Microsatellite and SNP Data: An Empirical Comparison in West African Cattle

Population Structure Assessed Using Microsatellite and SNP Data: An Empirical Comparison in West African Cattle

A pattern of 185 West African cattle belonging to 9 totally different taurine, sanga, and zebu populations was typed utilizing a set of 33 microsatellites and the BovineHD BeadChip of Illumina. The data supplied by every sort of marker was summarized by way of clustering strategies and principal element analyses (PCA). The goal was to … Read more

Development of genic KASP SNP markers from RNA-Seq data for map-based cloning and marker-assisted selection in maize

Maize is likely one of the most vita   l discipline crops on the planet. Many of the key agronomic traits, together with yield traits    and plant structure traits, are quantitative. Effective mapping of genes/ quantitative trait loci (QTL) influencing a key trait is important for marker-assisted choice (MAS) in maize breeding. Nevertheless, the … Read more

Genomic Prediction Based on SNP Functional Annotation Using Imputed Whole-Genome Sequence Data in Korean Hanwoo Cattle

Genomic Prediction Based on SNP Functional Annotation Using Imputed Whole-Genome Sequence Data in Korean Hanwoo Cattle

Entire-genome sequence (WGS) information are more and more being utilized into genomic predictions, providing the next predictive skill by together with causal mutations or single-nucleotide polymorphisms (SNPs) putatively in robust linkage disequilibrium with causal mutations affecting the trait. This research aimed to enhance the predictive efficiency of the custom-made Hanwoo 50 ok SNP panel for … Read more